PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049513-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRF
Protein Properties Length: 710aa    MW: 76040.4 Da    PI: 8.2243
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049513-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.7e-25234278145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  PSME_00049513-RA 234 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVEG 278
                       79****************************************985 PP
2QLQ59.21.2e-20164200137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       s+FT++Q+q+L++Q+l++Ky++ ++PvPp+Ll ++++
  PSME_00049513-RA 164 SPFTPSQWQELEQQALIFKYMMVGVPVPPDLLIPLRR 200
                       89*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.3E-13164200IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-14165198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.992165200IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.33234278IPR014977WRC domain
PfamPF088794.6E-21235277IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MDFSAACLDG MLGAGLNSSN NGNGNGHRLC RSASEMDLDQ TSRDQDWRSS SSASIKMART  60
DSFPTLLRSS SVISDASAAR METNNNSSAA SDLLESAEAA MLMRSDSVVS PYRSCLPFYH  120
QQQQAGGYQY ANNSNKPSGL PLSMGRVETM NNAGMHTILS GSRSPFTPSQ WQELEQQALI  180
FKYMMVGVPV PPDLLIPLRR TTNIFSTLPV SGSTLRSNLG WSSFHLGFAA NNADPEPGRC  240
RRTDGKKWRC SRDAVPDQKY CERHMNRGRH RSRKPVEGQT PHHHHSATAQ SSSTSGAAHN  300
SSSASSLAAA AARSAVTATT TTTAITSVTA SSTSSQTNLL RSSINTHQQQ QIGTKLSVFP  360
ASMSAGGGVA SPAASVSPFQ IALNVDRYQL NGMKGEIDGP MFESSGSQSI NGLSMLSSVN  420
NAWGSRNMVP AKTTNNDMMS YETRTLIDDG GQNFGLLNQN QMSSLLSMTQ NQSNSSQVLQ  480
GFGAGNEEEQ QQRGIRHNFF DDWPRTSRDR STTMSWTEME RMRSSSSSSA TKLSISIPSE  540
FDSPGSPRCE KLMLSPLKLS MSRDADPLGI DPTTQMGLGM GMGMGMGLAN QTNEQCRQKQ  600
TSWNPITWES PMGGPLAEVL NSTKDCNVKN SALNLMTDGW DCSPRGGDSS RMASPTGVLQ  660
KTFGSLSDSS TGSSPRAVNV AKAAHDSAGL CENLRTVTFV TGASAPISTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0000730.0KM000073.1 Larix kaempferi growth regulating factor 2 (GRF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0M3LAP30.0A0A0M3LAP3_9SPER; Growth regulating factor 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-50growth-regulating factor 2