PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049571-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 236aa    MW: 25927.9 Da    PI: 6.5002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049571-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.6e-367104196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+k+Cv+apyf++++  + +f ++hk+FGasn +kll +lp eer d+++++ yeA+ar+ dPvyG+v++i++lq+q+++lk
  PSME_00049571-RA   7 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGAIHKVFGASNFSKLLMHLPVEERYDTVATVSYEARARLLDPVYGCVSHIFALQHQVANLK 99 
                       6***********************995569*************************************************************** PP

            DUF260  92 aelal 96 
                       ++la+
  PSME_00049571-RA 100 EKLAV 104
                       *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5826109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGGGGASCGA CKFLRRKCVK GCVFAPYFCS DEMGAPHFGA IHKVFGASNF SKLLMHLPVE  60
ERYDTVATVS YEARARLLDP VYGCVSHIFA LQHQVANLKE KLAVGYAQLA ACSTSNGASQ  120
SPKNGYRMQS EMPSLISNSN SSSPYDQQYM IPWGDLQSIP SENVAVNNYE EEAKENENSW  180
GSFSVGTQRA IHYPSTSQET DVFKDAEIFS AQKVSNNNYY RDGDLQDVAS ALLRRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431097111LOB family transfactor Ramosa2.1
5ly0_B2e-3431097111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010262268.13e-51(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.16e-49LBD family protein