PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049648-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 315aa    MW: 35470.3 Da    PI: 9.8431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049648-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30166224259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ ++++ prsYYrC++a gCpvkk+v+r+a+dp+++++tY+g+H h+
  PSME_00049648-RA 166 NDGFQWRKYGQKMTRNNQRPRSYYRCAMApGCPVKKQVQRCAQDPTIIITTYKGKHSHS 224
                       8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-32153224IPR003657WRKY domain
SuperFamilySSF1182905.23E-27157225IPR003657WRKY domain
PROSITE profilePS5081127.255160226IPR003657WRKY domain
SMARTSM007741.0E-34165225IPR003657WRKY domain
PfamPF031061.3E-25166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
IAWFLILQIT VLVAEINRIN EENQKLKSML NCVCFRYNHL QKHIKPMLQQ WNNVDGDHQI  60
FYRDHGSEDI LWRRSINVES SSAISQHSDQ CRHGREQGGE KEKKNVKVMD DQQLSKNAMI  120
NSSTGQMEES PNKKLHVMTK VSGQHTAPGA KRIVSVQTRS DTSLINDGFQ WRKYGQKMTR  180
NNQRPRSYYR CAMAPGCPVK KQVQRCAQDP TIIITTYKGK HSHSLSPLAM ASLHASSNQL  240
INERLNITNF VADKQIIPFS TAIAKISTSS PFPTITLDLT DNRSDPPGLQ SEPAHLAAGS  300
LKLTSLCNGS TIEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23156225876Probable WRKY transcription factor 4
2lex_A1e-23156225876Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-90A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-46WRKY family protein