PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049659-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 391aa MW: 44094.2 Da PI: 4.7225

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049659-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	405.4	1.2e-124	168	384	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdy s fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00049659-RA 168 PPPAAFLGPKCALWDCSRPAQGTKWCQDYSSDFHMTLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 260 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkpr fesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++d++alyrle PSME_00049659-RA 261 ELFDMYVLEGESMREWLFFDKPRWDFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDSCALYRLE 353 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 l +v +kk++kgkv ++l+dlq++lg+l+a PSME_00049659-RA 354 LNMVCSKKNTKGKVGGNPLVDLQHQLGKLSA 384 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	0.001	2	54	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGAESGYVRF EQPEMVQKTR AAAVLAEEGG GEAEKEYWAK LREDQDKRRQ FAGNSRDFLV 60 DDLHTPEKDF ERVSRCTNIG EGLHQNSYPQ TSVQLPANIE HQENNNYVQT SEQLPPNLVE 120 GLEVTSELEG GQINFHQDYI PAAQPIFTLT GEEETSPVFN GPQPGLCPPP AAFLGPKCAL 180 WDCSRPAQGT KWCQDYSSDF HMTLASNEGA PGMRPVLRPG GIDLKDGPLF AALSAKTQEK 240 AVGIPECEGA ATAKSPWNAY ELFDMYVLEG ESMREWLFFD KPRWDFESGN RKQRSLPDYS 300 GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDSCALY RLELNMVCSK 360 KNTKGKVGGN PLVDLQHQLG KLSAEFSWVE K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGAESGYVRF EQPEMVQKTR AAAVLAEEGG GEAEKEYWAK LREDQDKRRQ FAGNSRDFLV  60
DDLHTPEKDF ERVSRCTNIG EGLHQNSYPQ TSVQLPANIE HQENNNYVQT SEQLPPNLVE  120
GLEVTSELEG GQINFHQDYI PAAQPIFTLT GEEETSPVFN GPQPGLCPPP AAFLGPKCAL  180
WDCSRPAQGT KWCQDYSSDF HMTLASNEGA PGMRPVLRPG GIDLKDGPLF AALSAKTQEK  240
AVGIPECEGA ATAKSPWNAY ELFDMYVLEG ESMREWLFFD KPRWDFESGN RKQRSLPDYS  300
GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDSCALY RLELNMVCSK  360
KNTKGKVGGN PLVDLQHQLG KLSAEFSWVE K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-133	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-121	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-132	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-133	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-123	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]