PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049726-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 483aa MW: 52598.6 Da PI: 7.0969

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049726-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.5	4.9e-15	61	90	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh lsefDe+krsCrrrLa+hn+rrrk+q+ PSME_00049726-RA 61 FHILSEFDEGKRSCRRRLAGHNQRRRKPQP 90 9**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.725	7	88	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.04E-11	60	92	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.8E-8	61	87	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MNMKIRTSNA STPDDHQQQS GVVTVAVPAG SRDAGAIGLK LGKRTYFEAV KENPAASPEP 60 FHILSEFDEG KRSCRRRLAG HNQRRRKPQP YSLAMKSARF ASGFYDDRQL GSILMDRSQF 120 MHPRITSNSI LEDSNDFKLG GYGKGAWPRV RAETQSSYDG QVSADDRRLN SILIDRPLFM 180 HPWITSNSNL ENSTDFKLGR FGKVALPRVK AEDKSSHDGQ ISADTLSRHN AERLLFLLQC 240 SKTVPGGAIN QDIHQHRQNP SAHISQGLTL TSSLEENLPG LDVISAAHGL SGVSNSGCAL 300 SLLSFQSEGS KASGSASFDM TTRSGLTMDQ FILEDQPFMV QPRLMQGVQP NFDFFAAEKL 360 LTICSQSSTN LATGGFPATA VNSVVNSMDK QHLGEALVSN TGCIGNFGGH DFGLLQGSSF 420 RDSQAASSQD MQGTIDLICR PSQTQNNDSH DQPGMAHQGS TQFTDGQLLR SLESSIYDTH 480 QLL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MNMKIRTSNA STPDDHQQQS GVVTVAVPAG SRDAGAIGLK LGKRTYFEAV KENPAASPEP  60
FHILSEFDEG KRSCRRRLAG HNQRRRKPQP YSLAMKSARF ASGFYDDRQL GSILMDRSQF  120
MHPRITSNSI LEDSNDFKLG GYGKGAWPRV RAETQSSYDG QVSADDRRLN SILIDRPLFM  180
HPWITSNSNL ENSTDFKLGR FGKVALPRVK AEDKSSHDGQ ISADTLSRHN AERLLFLLQC  240
SKTVPGGAIN QDIHQHRQNP SAHISQGLTL TSSLEENLPG LDVISAAHGL SGVSNSGCAL  300
SLLSFQSEGS KASGSASFDM TTRSGLTMDQ FILEDQPFMV QPRLMQGVQP NFDFFAAEKL  360
LTICSQSSTN LATGGFPATA VNSVVNSMDK QHLGEALVSN TGCIGNFGGH DFGLLQGSSF  420
RDSQAASSQD MQGTIDLICR PSQTQNNDSH DQPGMAHQGS TQFTDGQLLR SLESSIYDTH  480
QLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K0M756	0.0	A0A0K0M756_PINTB; SPL1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-13	SBP family protein