PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049738-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 215aa    MW: 24589.3 Da    PI: 7.9112
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049738-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.4e-162383257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+  ++   +p++ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00049738-RA 23 KTRWHPKPDQIQILEAIVNSgMVNPQREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83
                      89*****************99*************************************997 PP
2Wus_type_Homeobox102.33.4e-332285265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k+
   PSME_00049738-RA 22 AKTRWHPKPDQIQILEAIVNSGMVNPQREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRKR 85
                       689**********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.2321984IPR001356Homeobox domain
SMARTSM003893.7E-42188IPR001356Homeobox domain
SuperFamilySSF466891.45E-92284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-62385IPR009057Homeodomain-like
CDDcd000865.18E-52385No hitNo description
PfamPF000461.0E-132383IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKSALSHNYV PEKERERTVP VAKTRWHPKP DQIQILEAIV NSGMVNPQRE EIKRIRGQLE  60
EFGHVEDVNV FYWFQNRKAR VKRKRISRRQ MCKAPIFIFI FIDINNINVN ISSVSTCHHC  120
ESSPLFFCWA GNFFICRAPL QSAEGVREAS INIDNSVITV IVNDNPMQVP KEPINLGAFF  180
GDDALLLNSS GHLVQVNEWG FTMEGLDIGA AYFLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119536e-62JX411953.1 Picea abies WUSCHEL homeobox protein WOX8D (WOX8D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8671e-58R9R867_PICAB; WUSCHEL homeobox protein WOX8D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-28homeobox-3