PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049751-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 560aa MW: 62216.1 Da PI: 4.6632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049751-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	390	432	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N+++ Lr+++P+ +K++ +iL ++e+ k+L PSME_00049751-RA 390 LAERRRRKRLNERLCMLRSVVPTI-----TKMDRTSILSDTIEHTKQL 432 58*******************7.....6************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.062	383	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	386	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	389	438	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-7	390	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	390	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
SLQGVAMDTS IYDQVFVNRT MPESTWSNSN YGYFDISEYR VLGEANELLA LMDSNFTTGC 60 SVLNGTEGAK SENTELLMSQ YGNLGGSSQN LCDQAYNCAR NAVYPRDLDE NLFRYGHYNY 120 SKCVNTQNQD IRCDVSVGYG AQIEQNTYGS GTAFSCQNSD HLNKDQPVEQ ENTMCEIFSD 180 QAASQNELRL ICSNVSDISH VGSDSSKFSV GYNIHENFMK STIGQPYNGI SFHQDGEMEM 240 NGGLLGYNTE NVISTLLNAD KVRSIEPLEL NGTNGIATVS VNEMDAFDDE TPLSTSYERQ 300 FYTEQQSPQT ISLPVQVSEN RMPINTAGIQ LVKYDGNREE NGSRMEGLIV MNDADGTKVT 360 FTTGEGGSSN AKVVRGGVTK SEGHPAKNLL AERRRRKRLN ERLCMLRSVV PTITKMDRTS 420 ILSDTIEHTK QLLQQIRFLH GELEPQASWP AHLRAYEGYI RSAGMACDQK FSDKHISKFE 480 VKRIGSRDLN IHMTCQTNPS ILLSTISTLE SFGLDIQQAI FSCFSDFGMQ VQCSEIDDGK 540 TNIRPEDVKL ALLQNAGYLG

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

SLQGVAMDTS IYDQVFVNRT MPESTWSNSN YGYFDISEYR VLGEANELLA LMDSNFTTGC  60
SVLNGTEGAK SENTELLMSQ YGNLGGSSQN LCDQAYNCAR NAVYPRDLDE NLFRYGHYNY  120
SKCVNTQNQD IRCDVSVGYG AQIEQNTYGS GTAFSCQNSD HLNKDQPVEQ ENTMCEIFSD  180
QAASQNELRL ICSNVSDISH VGSDSSKFSV GYNIHENFMK STIGQPYNGI SFHQDGEMEM  240
NGGLLGYNTE NVISTLLNAD KVRSIEPLEL NGTNGIATVS VNEMDAFDDE TPLSTSYERQ  300
FYTEQQSPQT ISLPVQVSEN RMPINTAGIQ LVKYDGNREE NGSRMEGLIV MNDADGTKVT  360
FTTGEGGSSN AKVVRGGVTK SEGHPAKNLL AERRRRKRLN ERLCMLRSVV PTITKMDRTS  420
ILSDTIEHTK QLLQQIRFLH GELEPQASWP AHLRAYEGYI RSAGMACDQK FSDKHISKFE  480
VKRIGSRDLN IHMTCQTNPS ILLSTISTLE SFGLDIQQAI FSCFSDFGMQ VQCSEIDDGK  540
TNIRPEDVKL ALLQNAGYLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	398	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-25	beta HLH protein 93