PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049755-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32211.7 Da    PI: 8.8995
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049755-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-19158212256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ ++++eq   Lee F kn+ p  ++++ LA +l+L  rqV vWFqNrRa+ k
  PSME_00049755-RA 158 KKKLRLSREQCGLLEEIFLKNKAPEPDQKQALALQLNLRPRQVEVWFQNRRARTK 212
                       678899***********************************************98 PP
2HD-ZIP_I/II1062.9e-34158246190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk+rls+eq  lLEe F +++  ep++K++la +L+l+prqv+vWFqnrRARtk kq+E+d+e +kr+ ++l+een++L+ke e+Lr +
  PSME_00049755-RA 158 KKKLRLSREQCGLLEEIFLKNKAPEPDQKQALALQLNLRPRQVEVWFQNRRARTKVKQTEVDCELMKRCNESLVEENRKLHKELENLR-A 246
                       59*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-18150215IPR009057Homeodomain-like
PROSITE profilePS5007116.682154214IPR001356Homeobox domain
SMARTSM003897.0E-15156218IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-17158212IPR009057Homeodomain-like
CDDcd000861.29E-15158215No hitNo description
PfamPF000464.0E-16158212IPR001356Homeobox domain
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
SMARTSM003403.1E-18214257IPR003106Leucine zipper, homeobox-associated
PfamPF021837.4E-7214248IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDCTTELSLG LRIGNGTTTR DKDREYASQI NVNGPPVQLD LFPIAPFLPP EEKNLRGINR  60
SGGGSDRSAA KAKVPILPVP VSGLSDAYKI PVSCYYNEHA GTHTINVSSS SNSTVDSAAN  120
PVSRYDMFKR KRGATQELDN DLVYSTVLSS VEEEGCSKKK LRLSREQCGL LEEIFLKNKA  180
PEPDQKQALA LQLNLRPRQV EVWFQNRRAR TKVKQTEVDC ELMKRCNESL VEENRKLHKE  240
LENLRALKIS STPAATLTMC PSCERISDAD TKSHFTLAKV KSMFMRGAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162SKKKLRL
2206214RRARTKVKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN43e-77A9NKN4_PICSI; Uncharacterized protein
STRINGXP_009338969.18e-51(Pyrus x bretschneideri)
STRINGXP_004135907.11e-50(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-47HD-ZIP family protein