PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049785-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 642aa    MW: 71475.8 Da    PI: 5.538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049785-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068186208123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C++ F++   L  H+++H
  PSME_00049785-RA 186 YSCDFCKRDFRSAQALGGHMNVH 208
                       99*******************99 PP
2zf-C2H211.90.00068390412123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C++ F++   L  H+++H
  PSME_00049785-RA 390 YSCDFCKRDFRSAQALGGHMNVH 412
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-7184208No hitNo description
PfamPF139123.9E-5186209IPR007087Zinc finger, C2H2
SMARTSM003550.022186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-7385412No hitNo description
PfamPF139123.9E-5390413IPR007087Zinc finger, C2H2
SMARTSM003550.022390412IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115390417IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
APDHQRWSCP SPVHQEIASN YDQLPVFNSN SSSDENSFLC SISTAPNPSM VSMSQLLPSS  60
STIRSSSPLQ TNSHIMLQQQ QRHEFLPSTV LSISPYSPNS EHTLIPSPPV SNSLITMNIS  120
NSLMEISGFD RRHGGFASSM AESAAEVPGG NLLAPRIEDD DDSWKEKAFA EDTEGLIGVT  180
WPPRSYSCDF CKRDFRSAQA LGGHMNVHRR DRARLRQSFS THQVQAQDRQ RRSSPSTVHQ  240
EIASNYDQLP AFNSNSSSHE NSFLCSISSD PNPSMVSMSQ CHGGFSSSMA ESAVVLRKLQ  300
QARAFQPCFF PAIASLRHQN KDSNERDIRI NNLQNEETII LDEDRDSEEE VSGGNLLAPR  360
IEDDDDSWKE RAFAEDTDGL IGVTWPPRSY SCDFCKRDFR SAQALGGHMN VHRRDRARLR  420
QSFSTHQAQA PDHQRWSSSP PVHQEIASNY DQLPVFNSGS DENSFLCSIS TAPNPSMVSM  480
SQLLPSSSTI RSASPLQTNS HIMQQQQQRH EFLPSTVLSI SPYSPNSEHT LIPSPPVSNS  540
LITMNISNSL MDISGFDRRH GGFASSMAES ATVLRKLQQA RAFQPCLFPA VASLRQQNKD  600
SNEGDIRINN LQNEETIILD ENRYSEEDDG LDLELRLGQM KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-12181412229superman protein
2l1o_A3e-12181412229Transcriptional regulator SUPERMAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-27C2H2 family protein