PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049813-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 326aa    MW: 37000 Da    PI: 9.444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049813-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32249307159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r ++dp++v++tYeg H h+
  PSME_00049813-RA 249 LDDGYRWRKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHP 307
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
Gene3DG3DSA:2.20.25.804.9E-33234308IPR003657WRKY domain
SuperFamilySSF1182901.44E-28241308IPR003657WRKY domain
PROSITE profilePS5081129.057244309IPR003657WRKY domain
SMARTSM007747.5E-38249308IPR003657WRKY domain
PfamPF031069.8E-26250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKGDMSARMK IESATRHNVN FLQYSSGGYG CPSDDLIFSP NSVVQRPVTW VDSNFMNPDL  60
SSTANSSSFP RINGGINGLS SSKPHSPPAP SHSLTEFIQT QSQAHDQGKN EHVNSMKNIQ  120
QQQEQMTEIA CNPNIWKPSW LSQTTTSGKE ETVQRREFNV PGSFPESNSS GDTQARLSAM  180
RGFTGLEGQY FPAVHDQHNK GISESERLQL GENDGGNVKD NRSRSRGKLE KRIRRPRYAF  240
QTRSQVDILD DGYRWRKYGQ KSVKNNLYPR SYYRCTHQTC SVKKQVQRLS RDPEIVVTTY  300
EGIHMHPSEK SMESFDHILN QMQFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24241306974Probable WRKY transcription factor 4
2lex_A1e-24241306974Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0866080.0EF086608.1 Picea sitchensis clone WS02921_C22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NZ050.0A9NZ05_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-48WRKY DNA-binding protein 75