PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049828-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 139aa    MW: 15805.6 Da    PI: 8.2607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049828-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.7e-09100128230
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPka 30 
                       +r+h+++Er+RR++++  f++Lr+llP+ 
  PSME_00049828-RA 100 KRNHKMIERQRRNEMKLLFSRLRSLLPEE 128
                       689************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.25298139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-899128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6100128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-7100129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSIPSWLHSP FFSYNDVTNK FNIESVSSNS DPFSSTQDPF LPSYSTDDRH AHRTNFVHGG  60
ISETPASLSS LPLLQTFCNS SPPTDGQSSN RLRGSVTADK RNHKMIERQR RNEMKLLFSR  120
LRSLLPEENL RVCFSQLDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199110KRNHKMIERQRR
2100110RNHKMIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-