PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049849-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 271aa    MW: 30293.4 Da    PI: 5.6861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049849-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-153584255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G r+++ +g+Wv+ Ir+p        +r++lg+f tae+Aa+a+++a+  ++g
  PSME_00049849-RA 35 RYRGARQRH-WGSWVSKIRHP-----IlkTRVWLGTFQTAEDAARAYDEAAILMYG 84
                      69****999.**********8.....556**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-283495No hitNo description
PfamPF008472.5E-83584IPR001471AP2/ERF domain
SMARTSM003801.5E-333599IPR001471AP2/ERF domain
PROSITE profilePS5103220.0733593IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-173594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-283593IPR001471AP2/ERF domain
PRINTSPR003673.0E-103647IPR001471AP2/ERF domain
PRINTSPR003673.0E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
GSASITVLCV DLELEDNFVS RKGILTRKIM ASPQRYRGAR QRHWGSWVSK IRHPILKTRV  60
WLGTFQTAED AARAYDEAAI LMYGPHHAKT NFTYDPSAPP SSRPSFLSGA LTAKLAALNI  120
EMQEGTANKD HMESPVMTAS LASLRLDTEK SNLGIWQKRS GKRSESNMAL TAKLAALNIE  180
MEEEPANKDH MESPVMTASL ASLRLDTEKS NLGIRKTMIE EQPSLKQEET EDDFALEIIE  240
EKPSLKQEET EDNNALEMIE ELLHGKNVKI T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1107887e-87BT110788.1 Picea glauca clone GQ03227_P10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002985173.13e-50ethylene-responsive transcription factor WIN1
TrEMBLD8SPG78e-49D8SPG7_SELML; Uncharacterized protein
STRINGEFJ136671e-49(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-29ERF family protein