PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049981-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 65aa MW: 7307.69 Da PI: 9.0346

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049981-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65	1.8e-20	15	61	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk++r+kC+++Cvlapyfp+++++kf vh++FG +v+kll+ PSME_00049981-RA 15 PCAACKMQRKKCTDKCVLAPYFPQAEREKFLLVHRVFGHGHVIKLLQ 61 7*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.011	14	65	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-19	15	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGETAMNSEG LSTSPCAACK MQRKKCTDKC VLAPYFPQAE REKFLLVHRV FGHGHVIKLL 60 QVQMI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022964985.1	1e-17	LOB domain-containing protein 11-like isoform X2
Refseq	XP_022970429.1	1e-17	LOB domain-containing protein 1-like isoform X2
Swissprot	Q9SK08	2e-17	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	B8LQI9	2e-21	B8LQI9_PICSI; Uncharacterized protein
STRING	Gorai.012G185900.1	4e-17	(Gossypium raimondii)
STRING	OMERI05G01710.1	4e-17	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	8e-20	LOB domain-containing protein 11