PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050087-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 285aa    MW: 32372.1 Da    PI: 10.1528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050087-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-11134182555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RR++++   ++L +llP+     +++K + ++ L +Av++I++Lq
  PSME_00050087-RA 134 HKLVERQRRNQMRALCSTLVSLLPEeY---RKTKHTLSDKLLEAVNHIRHLQ 182
                       99***********************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935129181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-12133201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11133199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-9134185No hitNo description
PfamPF000107.5E-8134182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-4135187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKIQTPTKSI NFVEPVSFIY NDSSATVKFD ALSTKRPHDY GLLGTASLCP MVQLDQTGAD  60
HDSSPAVKQC WPKFVTNIRD RDQTLTCQLR VNSLPNLKNP LFPPTRSHRR KKAAEGRDQD  120
HEARRECIGN SDVHKLVERQ RRNQMRALCS TLVSLLPEEY RKTKHTLSDK LLEAVNHIRH  180
LQKKLVELEK KRDELKTTVK QFSNSSCAHK ILLAYEVRPS NVRDKFQTIR VSKVGQGIQV  240
TVNTFKNQID FSSLLMVLEE AGGEVLSATG FAISDRVFYS IHSKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-16bHLH family protein