PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050119-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 477aa    MW: 53178.7 Da    PI: 8.2701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050119-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-13290335555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++N++f  L  ++P +     kK++K+++L  +++Y+k+Lq
  PSME_00050119-RA 290 HIMAERNRREKLNQRFISLAAIVPGL-----KKMDKISVLGDTIKYVKQLQ 335
                       999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF634915.23E-12684IPR003103BAG domain
Gene3DG3DSA:1.20.58.1204.8E-41172IPR003103BAG domain
PfamPF021792.5E-101483IPR003103BAG domain
PROSITE profilePS5088815.148285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-12290339No hitNo description
PfamPF000102.0E-10290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16290352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MRKNAKIERA SRAIADLSLE VDKLAAQVSS LEALISKGKR VVENDLVDLI EMLMRQLVKL  60
DGITVDGDAK LQRRMQGKEV PDLVGFSEPT AGFSEPTAEQ LQALMGYHNI FPYESLTSMP  120
TGCPRNLKLP STVSHLGIRP SGGNLDPERP VKHFKEDSSF QCQQRFSNKI STPPSIYVPN  180
SQQKLQHNLL ENYFSNFFKP KVHQTCAENM GPATLCKVCK KAEILATSGG HDHSCISDIS  240
HSHIDGSSAS STQFFQRNDG LSDMRISSVP AGNRHSNQVP NRASGNSHDH IMAERNRREK  300
LNQRFISLAA IVPGLKKMDK ISVLGDTIKY VKQLQDRIKT LEEQTSKQTV QSVVYVKKLL  360
CTDDQYSDKV SSSSINSSPD KDGTVVLTPE IEIRVINGNV LIHAHCERRK GLLIKFIEEL  420
DKLHLTVVNA SILSFSEATF DFTFNAQVYS ACCVVFSDHY WAMQAVDSML RYIQPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hwi_B7e-2218484167BAG family molecular chaperone regulator 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1118001e-89BT111800.1 Picea glauca clone GQ03303_M20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein