PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050182-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 165aa    MW: 19069.9 Da    PI: 10.3498
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050182-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l ++v+++G g W + +++ g++R++k+c++rw++yl
  PSME_00050182-RA 14 RGAWTAEEDLILCEYVRLHGDGGWQKLPQKAGLKRCGKSCRLRWRNYL 61
                      89*********************************************7 PP
2Myb_DNA-binding47.25.1e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +++el+++ +++lG++ W++Ia +++ gRt++++k++w++++
  PSME_00050182-RA  67 RGNISYDDEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHM 112
                       6788999***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.539965IPR017930Myb domain
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-2813108IPR009057Homeodomain-like
PfamPF002499.4E-171461IPR001005SANT/Myb domain
CDDcd001673.13E-101661No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2265114IPR009057Homeodomain-like
SMARTSM007171.8E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.14266116IPR017930Myb domain
PfamPF002494.5E-1367111IPR001005SANT/Myb domain
CDDcd001676.33E-1073112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGRSPCCSKE VLNRGAWTAE EDLILCEYVR LHGDGGWQKL PQKAGLKRCG KSCRLRWRNY  60
LRPDINRGNI SYDDEELIIR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HMRQNEVQLQ  120
AKAQSLKKRP KSPPLFENYV SRAIPLKIKP NCFNGYGSTT NIPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKKRPKS
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954738.12e-64transcription factor MYB8-like
RefseqXP_025677071.12e-64transcription factor MYB8-like
SwissprotP102901e-58MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A167V9011e-69A0A167V901_PICAB; Transcription factor MYB30
TrEMBLF8TJT08e-70F8TJT0_PINRE; MYB-like protein (Fragment)
STRINGPOPTR_0006s23840.12e-62(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-60myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]