PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050229-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 346aa    MW: 37624.5 Da    PI: 9.7325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050229-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31276333359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp+v+++tYegeH h+
  PSME_00050229-RA 276 DEFSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERASDDPNVLIVTYEGEHSHS 333
                       99***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-15224272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.9E-32262333IPR003657WRKY domain
PROSITE profilePS5081130.343269335IPR003657WRKY domain
SuperFamilySSF1182906.15E-26272333IPR003657WRKY domain
SMARTSM007749.2E-37274334IPR003657WRKY domain
PfamPF031061.1E-26276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAVEMLDFRN YMERDVHQAA SATLESVQNL IQLISRQREM QEEGENRCGS AAEMAANRFK  60
KAVSMLGTTT GHARFRKAPP GSSVPVPKLC PSFETGHGHA NMSASSSSSQ DPLKDSEGFI  120
SPAPLNNNTL FRPTPLHVQT PSQNPVMDSS PPQHKLPLLP MNSSDYSFMG SRSFKESVIS  180
SSPLSSTNSF MSSLTASDPC DKSSVLVRSL SPTAVGRPPL SSSKKACIHG KPDDLSGKCN  240
TTNGRCHCSS KRKKSRVKRT VRVPAISAKL ADIPVDEFSW RKYGQKPIKG SPHPRGYYKC  300
STVRGCPARK HVERASDDPN VLIVTYEGEH SHSHSVSENT GLVLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21262332271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1021090.0BT102109.1 Picea glauca clone GQ0166_J08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AD760.0D5AD76_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-56WRKY DNA-binding protein 7