PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050268-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 273aa    MW: 30915.5 Da    PI: 8.5283
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050268-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30182239259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++pr+YYrC+ ++C+vkk ver+a+d  +v++tY g+Hnh+
  PSME_00050268-RA 182 EDGYKWRKYGKKLVKNSPNPRNYYRCSDSNCEVKKTVERDAQDRAIVITTYLGKHNHQ 239
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-31169241IPR003657WRKY domain
SuperFamilySSF1182901.44E-26174241IPR003657WRKY domain
PROSITE profilePS5081129.367176241IPR003657WRKY domain
SMARTSM007747.9E-33181240IPR003657WRKY domain
PfamPF031066.1E-24182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
QVNRSSLTQE EASYAGGCPT PLDLFKDLAS FRETDEVFAM ANCDARTGHF QAAIKVLSKG  60
KTQLLHEKNC SQYMNQGAEA FKVSDFLVSE EEFDNSCKSE ADQSYKNINT AQSGESFQRE  120
YGGSFPRNPP CIQGIQLERN STVIQTHQPP ETINPQKSSR KRKAERAMKY AFLTKSELDN  180
LEDGYKWRKY GKKLVKNSPN PRNYYRCSDS NCEVKKTVER DAQDRAIVIT TYLGKHNHQS  240
PTVMYYFGKT EIAQASAATP NYQLGNRAFF CSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-221742411077Probable WRKY transcription factor 4
2lex_A8e-221742411077Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-33WRKY DNA-binding protein 57