PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050292-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 192aa MW: 21098.4 Da PI: 8.5778

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050292-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.1	5.9e-19	13	59	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l PSME_00050292-RA 13 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLM 59 7*******************************************985 PP
2	DUF260	56.3	9.1e-18	81	137	44	100
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l ++pe++r+d+++slvyeA+ar+rdPvyG++g+i++lq+q+++l++el+++++e PSME_00050292-RA 81 GMLLEVPENQRSDTANSLVYEANARLRDPVYGSMGLISTLQHQIQSLQSELSVVRAE 137 78999***********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.11	12	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-18	13	59	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-16	80	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MVGGQKPLNT STPCAACKLL RRRCAQECPF SPYFSPHEPQ KFACVHKIFG ASNVSKMLMV 60 HFESLISFVL AMIKVCLSIP GMLLEVPENQ RSDTANSLVY EANARLRDPV YGSMGLISTL 120 QHQIQSLQSE LSVVRAELVR YRCNLQDQNA VTATPSMVNI RAGYPPVSSS ICSQTASDSV 180 DFAAATIRPW KS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-39	9	144	7	117	LOB family transfactor Ramosa2.1
5ly0_B	5e-39	9	144	7	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT101278	1e-106	BT101278.1 Picea glauca clone GQ01301_C19 mRNA sequence.
GenBank	EF087821	1e-106	EF087821.1 Picea sitchensis clone WS02816_D21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024992934.1	3e-61	LOB domain-containing protein 15
Swissprot	Q9AT61	6e-56	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A9P2E3	1e-102	A9P2E3_PICSI; Uncharacterized protein
STRING	EOY20040	2e-59	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-58	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]