PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050347-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 251aa    MW: 28322.1 Da    PI: 5.5384
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050347-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.77.3e-2869315101
            DUF260  15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                       dCv+apyf++++ + +f +vhk+FGa+nv+kll +lp  +r +a+ ++ yeA+ar++d vyG+v++i++lqqq+++l+aela ++++l
  PSME_00050347-RA   6 DCVFAPYFCSDEgAVHFTAVHKIFGARNVSKLLLHLPMLDRCEAVVTISYEAQARLQDLVYGCVAHIFALQQQVASLQAELAFVQAQL 93 
                       7*********9989*********************************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.274193IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-25690IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDNILDCVFA PYFCSDEGAV HFTAVHKIFG ARNVSKLLLH LPMLDRCEAV VTISYEAQAR  60
LQDLVYGCVA HIFALQQQVA SLQAELAFVQ AQLASRVSSG SASIFANHPD ISSSSYSQHL  120
QFPAHLSLPC QPIPQPYNDL LSRVKEENSY GFATYMDCDF SVSPSDSSSP LMEVLQRFRS  180
LEENEGEDNG ELQALAHALL RRVPNLTYLN NFNRPPLPDK YFRRYIWNFF LSQMATKRAK  240
MMTNLEEDNL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2069325111LOB family transfactor Ramosa2.1
5ly0_B6e-2069325111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D33e-87D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.14e-46(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-43lateral organ boundaries-domain 29