PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 287aa    MW: 31773.4 Da    PI: 4.8081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42.1e-14103151155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y G+r    r +W A+I+d         +++lg+++t+eeAa+a++aa++k++g
  PSME_00050409-RA 103 TKYIGIRC-Q-RRKWGARIKDaN-----GESIWLGTYDTEEEAARAYDAAARKIRG 151
                       6999**95.5.57*****99944.....4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.12292159IPR001471AP2/ERF domain
PfamPF008471.1E-8103151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-19104160IPR001471AP2/ERF domain
SMARTSM003804.4E-21104165IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15105160IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MCGGTVISEF SEKEKLSNSE KVTMANFWAG LPELPGPSEE SFGLDSLNSD EFLNPLDIFE  60
EKQIAKDLLS ARQEFPLAEG GLATHPSNCR EAIKGTRSRE RKTKYIGIRC QRRKWGARIK  120
DANGESIWLG TYDTEEEAAR AYDAAARKIR GKRAKVNFDD DLPPPKRKVF KKSKNQMTED  180
SSIPTDMQIS SVQTVHIATT LRTSSSLNTT IEGAGADFMD VLTELIKGIS HEDGNSLLDD  240
NFIKRKTSQE ALESNSVEES IMSELRELLG LEGDTENSTG RVDTNGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-