PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050470-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 287aa    MW: 32797.7 Da    PI: 5.465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050470-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-131563148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+ Ed +l ++++ +G +  W+ I+ + g++R++++c++rw++yl
  PSME_00050470-RA 15 RGVWTKTEDMILSEYIRVHGDDrGWTNIPPKAGLKRSGNSCRLRWLNYL 63
                      899*****************999************************97 PP
2Myb_DNA-binding53.17.5e-1769114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00050470-RA  69 RGNISPDEEELIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNSHL 114
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0311063IPR017930Myb domain
SuperFamilySSF466891.02E-2413110IPR009057Homeodomain-like
SMARTSM007175.1E-111465IPR001005SANT/Myb domain
PfamPF002493.4E-121563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-201770IPR009057Homeodomain-like
CDDcd001678.39E-81863No hitNo description
PROSITE profilePS5129426.29864118IPR017930Myb domain
SMARTSM007176.9E-1668116IPR001005SANT/Myb domain
PfamPF002492.7E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2571118IPR009057Homeodomain-like
CDDcd001671.44E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRSPNCFSK EGLNRGVWTK TEDMILSEYI RVHGDDRGWT NIPPKAGLKR SGNSCRLRWL  60
NYLRPDIKRG NISPDEEELI IRLHRLLGNR WSLIAGRIPG RTDNEIKNYW NSHLSKKVLM  120
SMNKSEPNSR TQKLKRIRSQ LSPASPVQNH VIKTIPVKIT MAVRHSEMVR PIEFNSDGCS  180
NYSSSEYETF KLCNVEEIPE RVVEEAEGRN STTSTSSLED QESGPHSDNF GVDTATLDDT  240
LFDLDELSSP HWNELFSPSD NSTDLGIFEE FYRAGVAEMI EFEEIVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361685.23e-64PREDICTED: transcription factor TT2
SwissprotQ9S9K92e-53MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9111e-103A0A167V911_PICAB; Transcription factor MYB31
STRINGXP_009361685.11e-63(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-47myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]