PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050471-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 185aa    MW: 21106.4 Da    PI: 10.3527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050471-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-0976129255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                       +  hn+ Er+  +++N  +++L+ llP++s a+ kK  +  +i+  A +YI++L+
  PSME_00050471-RA  76 KLFHNAKERQNQKKLNGLYAKLQCLLPHSS-ANMKKqINNPAIVCGALKYISHLR 129
                       667*************************85.555556****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-474133No hitNo description
PROSITE profilePS5088810.67774128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-775132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-975146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-776128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEKAALPPVE SLESQLIGSD YWREGLGFPG FPSSLLQDGA QLLPSADNVD CKSYHFKKIA  60
EKGSDSNKSD DIAMKKLFHN AKERQNQKKL NGLYAKLQCL LPHSSANMKK QINNPAIVCG  120
ALKYISHLRG EIKKLSRKRD ELLTRKRISE RDVSISIRER MLRFSQHIQL HSSSLQFFCY  180
SKKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.16e-13bHLH family protein