PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050538-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 262aa MW: 29314.1 Da PI: 6.7254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050538-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	92	125	2	37
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK 37 +++h ++Er+RR+++N f+ Lr+llP + +K PSME_00050538-RA 92 KKNHRMIERQRRKDMNGLFAMLRSLLPDeN---LRQK 125 689************************944...3333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.737	90	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-8	91	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.40E-8	92	127	No hit	No description
SuperFamily	SSF47459	1.44E-8	92	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-7	92	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNQFHVERLP ASSINPFLSP QAQQLEDPPT DNTHQAASSC DFVYSCNSET PAYSHLAPSN 60 IPPLMVTICN NSSHQNDGQA CNRLPGSVSA DKKNHRMIER QRRKDMNGLF AMLRSLLPDE 120 NLRQKVEDLS TERDKIKANS DEHAKVSMEG VRLSCNEKKC IKAPPIGGSD REFPTVKIKS 180 MGSTVQVCTN TFQHQIVYSD LLLSLEEGGL EVLCASSCAI NNRIFHTIHT KVSDIETLNI 240 DTLEQKLWHL IKTNYHTGDQ LL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNH5	2e-60	B8LNH5_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-07	bHLH family protein