PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050582-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 396aa MW: 44372.6 Da PI: 6.5084

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050582-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.5e-55	18	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yL +kv +++++ +i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdkev+ PSME_00050582-RA 18 LPPGFRFHPTDEELVSCYLVRKVLDNSFSG-IAIADVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEVF 109 79***********************999.88***********99999************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +++l+g+kktLvfy+grapkgekt+Wvmheyrle PSME_00050582-RA 110 KAhTDKLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 146 9867788**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-63	14	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	18	170	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MIMGSSSRSS GNSGEEGLPP GFRFHPTDEE LVSCYLVRKV LDNSFSGIAI ADVDLNKSEP 60 WDLPGKAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDKEVFK AHTDKLIGMK 120 KTLVFYRGRA PKGEKTNWVM HEYRLEGHLS YHQLSKNCKD EWVVCRINHK NSGGKKTSPP 180 GLINRNFYID ECLGSHSLPA LLESPTYTTR AVQNEETELS DIANIHLCNN NNILPNDPQF 240 NLNMRTANPM SCLFSQISSS GSFQGVSSQM GSSNPYLMAL AEQYSISELN LKQCKMEPSS 300 SGANNDNSLQ ISHQEQWSMG RARHDQQQQQ LNIENNGISN TGTMETHGID PQDHTAMCIN 360 PDEINPAMFN RANRSYPVDL SAEAGPALDL DSLWAY

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MIMGSSSRSS GNSGEEGLPP GFRFHPTDEE LVSCYLVRKV LDNSFSGIAI ADVDLNKSEP  60
WDLPGKAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDKEVFK AHTDKLIGMK  120
KTLVFYRGRA PKGEKTNWVM HEYRLEGHLS YHQLSKNCKD EWVVCRINHK NSGGKKTSPP  180
GLINRNFYID ECLGSHSLPA LLESPTYTTR AVQNEETELS DIANIHLCNN NNILPNDPQF  240
NLNMRTANPM SCLFSQISSS GSFQGVSSQM GSSNPYLMAL AEQYSISELN LKQCKMEPSS  300
SGANNDNSLQ ISHQEQWSMG RARHDQQQQQ LNIENNGISN TGTMETHGID PQDHTAMCIN  360
PDEINPAMFN RANRSYPVDL SAEAGPALDL DSLWAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	18	176	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	18	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	18	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	18	176	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	18	176	20	174	NAC domain-containing protein 19
3swm_B	1e-53	18	176	20	174	NAC domain-containing protein 19
3swm_C	1e-53	18	176	20	174	NAC domain-containing protein 19
3swm_D	1e-53	18	176	20	174	NAC domain-containing protein 19
3swp_A	1e-53	18	176	20	174	NAC domain-containing protein 19
3swp_B	1e-53	18	176	20	174	NAC domain-containing protein 19
3swp_C	1e-53	18	176	20	174	NAC domain-containing protein 19
3swp_D	1e-53	18	176	20	174	NAC domain-containing protein 19
4dul_A	1e-53	18	176	17	171	NAC domain-containing protein 19
4dul_B	1e-53	18	176	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT116398	0.0	BT116398.1 Picea glauca clone GQ03718_B07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620729.1	3e-96	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-87	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	G8CPZ1	0.0	G8CPZ1_PICAB; NAC-domain containing protein 2
STRING	cassava4.1_010179m	1e-95	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-89	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]