PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050587-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 117aa MW: 13329.1 Da PI: 10.8337

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050587-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.8	6.4e-30	5	76	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++ r+nra++sgyWkatg+dk++l+ ++ g+kk Lvfy gr pkg kt+W+mheyrl PSME_00050587-RA 5 GEQEWYFFSPRDRKYPNRARSNRAATSGYWKATGTDKPILT---STSGVKKALVFYGGRPPKGIKTNWIMHEYRL 76 689***********************************9...678************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.095	1	106	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-36	3	107	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	8	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
KATFGEQEWY FFSPRDRKYP NRARSNRAAT SGYWKATGTD KPILTSTSGV KKALVFYGGR 60 PPKGIKTNWI MHEYRLADSG ARPSSFPNNK GSLRLDDWVL CRIYKKNGHS QRVQGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	1	112	65	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	1	112	65	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	1	112	65	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	1	112	65	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	1	112	68	174	NAC domain-containing protein 19
3swm_B	1e-45	1	112	68	174	NAC domain-containing protein 19
3swm_C	1e-45	1	112	68	174	NAC domain-containing protein 19
3swm_D	1e-45	1	112	68	174	NAC domain-containing protein 19
3swp_A	1e-45	1	112	68	174	NAC domain-containing protein 19
3swp_B	1e-45	1	112	68	174	NAC domain-containing protein 19
3swp_C	1e-45	1	112	68	174	NAC domain-containing protein 19
3swp_D	1e-45	1	112	68	174	NAC domain-containing protein 19
4dul_A	1e-45	1	112	65	171	NAC domain-containing protein 19
4dul_B	1e-45	1	112	65	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888238.2	2e-59	NAC transcription factor 25-like, partial
Refseq	XP_021902077.1	9e-59	NAC transcription factor 25
Swissprot	Q8GY42	6e-54	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A482ERL1	3e-58	A0A482ERL1_9SPER; NAC3 domain protein
STRING	evm.model.supercontig_27.81	4e-58	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-56	NAC domain containing protein 25