PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050636-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 199aa    MW: 22815.7 Da    PI: 8.3869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050636-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+lv  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00050636-RA 15 KGAWTKEEDERLVAFIEAHGEGSWRSLPKAAGLLRCGKSCRLRWINYL 62
                      79******************************99************97 PP
2Myb_DNA-binding58.31.8e-1868113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++++eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w++++
  PSME_00050636-RA  68 RGNFSEEEDDLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHM 113
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8881062IPR017930Myb domain
SuperFamilySSF466891.22E-3013109IPR009057Homeodomain-like
SMARTSM007174.2E-131464IPR001005SANT/Myb domain
PfamPF002493.2E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-231669IPR009057Homeodomain-like
CDDcd001678.05E-101762No hitNo description
PROSITE profilePS5129428.68263117IPR017930Myb domain
SMARTSM007171.9E-1767115IPR001005SANT/Myb domain
PfamPF002497.1E-1768112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2870117IPR009057Homeodomain-like
CDDcd001676.23E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRSPCCEKA HDNNKGAWTK EEDERLVAFI EAHGEGSWRS LPKAAGLLRC GKSCRLRWIN  60
YLRPDLKRGN FSEEEDDLII KLHSLLGNKW SLIAGRLPGR TDNEIKNYWN THMKRKLLSR  120
GLDPQSHRPL GKHCNTSLSS QFAPQHEIQA FQSPRTTEIA DSFQYDRPEN SAVERAASDA  180
KEAKERPDLN LDLCIWHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-301411726128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010760.0EF601076.1 Picea glauca R2R3-MYB transcription factor MYB13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957488.18e-89myb-related protein Hv1
SwissprotP813934e-85MYB08_ANTMA; Myb-related protein 308
TrEMBLA5JYF71e-124A5JYF7_PICGL; R2R3-MYB transcription factor MYB13
STRINGSi030943m3e-88(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-86myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]