PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00050750-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 318aa MW: 35851.9 Da PI: 5.3914

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00050750-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.3	2.6e-35	33	140	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGf hPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfF++rd+ky++g r+nra++sgyWkat dk++l PSME_00050750-RA 33 LPPGFLLHPTDEELVVHYLKNKASSMPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFIPRDRKYPNGARPNRAATSGYWKATRMDKPIL 124 79**************************.89***********8888999********************************** PP NAM 94 sk...kgelvglkktL 106 ++ ++++vg kk L PSME_00050750-RA 125 TStsgGTQKVGAKKAL 140 998888889**998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-43	27	152	IPR003441	NAC domain
PROSITE profile	PS51005	36.287	33	180	IPR003441	NAC domain
Pfam	PF02365	1.5E-14	34	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
FCQNSDNLNF FCSNCELMES PASFSGSHQQ PQLPPGFLLH PTDEELVVHY LKNKASSMPL 60 PVTIIAEIDL YKFDPWELPG KATFGEQEWY FFIPRDRKYP NGARPNRAAT SGYWKATRMD 120 KPILTSTSGG TQKVGAKKAL LDDWVICRIY KKNGHSQRVQ GAERDESPSA DEVMTSLPNI 180 EQQNKLQLPK LGPFSGLLET DNPFIEGLLN DEAMDGNGKI SRLPHQVHSS DLSHNNFNNS 240 NDNNSDFQFE VVPKQEALAV DNENKFNSLK RTLSLAAFGD EEIHSAKRFN DMQNNYSYNV 300 NNNVSALLNS MQPNQTFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-49	30	158	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-49	30	158	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-49	30	158	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-49	30	158	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-49	30	158	17	174	NAC domain-containing protein 19
3swm_B	8e-49	30	158	17	174	NAC domain-containing protein 19
3swm_C	8e-49	30	158	17	174	NAC domain-containing protein 19
3swm_D	8e-49	30	158	17	174	NAC domain-containing protein 19
3swp_A	8e-49	30	158	17	174	NAC domain-containing protein 19
3swp_B	8e-49	30	158	17	174	NAC domain-containing protein 19
3swp_C	8e-49	30	158	17	174	NAC domain-containing protein 19
3swp_D	8e-49	30	158	17	174	NAC domain-containing protein 19
4dul_A	7e-49	30	158	14	171	NAC domain-containing protein 19
4dul_B	7e-49	30	158	14	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841705.1	9e-83	NAC transcription factor 56
TrEMBL	W1P8R5	2e-81	W1P8R5_AMBTC; Uncharacterized protein
STRING	ERN03380	4e-82	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-62	NAC domain containing protein 25