PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050794-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 280aa    MW: 31353.9 Da    PI: 9.5058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050794-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-05172217855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +E++ R++++   ++L  llP+ +  ++++ +  + L +++eYI++L+
  PSME_00050794-RA 172 VEKQKRNKMKALCSTLILLLPEEF--NKTRDTLPDKLLEVIEYIRHLK 217
                       7*********************65..9999****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.816164216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-5170231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-5171226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-5172220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKNYPYKYPY KPSSSSYSQE AACLPYYIGN IDTDECIQIQ RPIKSIKFVE PGTCILDDAP  60
APVIFDALTT KKPHDYSLFG TASLGPDVRL DQTAKDGSSL AVTQSWQKLA AKFGDPAQTL  120
TYNSPGSSSL NSSRPFFPPT QIHRRKKMAA VEGREHDASR KCIVNGHIRK GVEKQKRNKM  180
KALCSTLILL LPEEFNKTRD TLPDKLLEVI EYIRHLKHKL IEVGDKRDKL NFSATVKPIS  240
NGSCVYRSLQ TSHAQPFNVP ENSQIFTILI ALSYTGELIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.13e-09bHLH family protein