PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050855-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 321aa    MW: 36668.6 Da    PI: 8.8653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050855-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-162976148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WTt Ed +l+++++ +G g+W++ ++  g++R++k+c++rw++yl
  PSME_00050855-RA 29 RGTWTTKEDMILLEYIRTHGEGRWTKLSQNAGLKRCGKSCRLRWLNYL 76
                      89********************************************97 PP
2Myb_DNA-binding50.16.4e-1682127148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg  T++Ed+l+++ +++lG++ W++Ia +++ +Rt++++k++w+++l
  PSME_00050855-RA  82 RGDITPDEDDLIIRMHNLLGNR-WSLIAGRLP-NRTDNEIKNYWNSHL 127
                       6778******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3382476IPR017930Myb domain
SuperFamilySSF466892.81E-2927123IPR009057Homeodomain-like
SMARTSM007172.3E-142878IPR001005SANT/Myb domain
PfamPF002492.6E-152976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-223083IPR009057Homeodomain-like
CDDcd001671.03E-103176No hitNo description
PROSITE profilePS5129425.25177131IPR017930Myb domain
SMARTSM007177.7E-1681129IPR001005SANT/Myb domain
PfamPF002491.2E-1482127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2584131IPR009057Homeodomain-like
CDDcd001671.49E-1186127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
HHQLWSYRVR ISTNMGRIPC CSTKGGLNRG TWTTKEDMIL LEYIRTHGEG RWTKLSQNAG  60
LKRCGKSCRL RWLNYLRPDI KRGDITPDED DLIIRMHNLL GNRWSLIAGR LPNRTDNEIK  120
NYWNSHLSKR LAMNKSQQDK QILMTRSSFL SPFQNQVFKP SPVKITTAKR HSEKVRPNSC  180
CNGYGGKYHS SDEAPFKLPV AKETANPSKS KWCDLVVEKM ITDDESERIA SLETADVNIV  240
RTKVINSTYP LSSLAEQQFP HPDLFAVSLA QSSMDFDELS SPYSNLLWSP SNYSLPEFGL  300
QEFYTAQAPL TAETNGFEDI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252713125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-103B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-57myb domain protein 3