PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050907-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 439aa    MW: 48505.9 Da    PI: 6.6457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050907-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30237295259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++prsYYrC+s  gCp++k+vers +dp+++eitY+ eHnh 
  PSME_00050907-RA 237 SDIWAWRKYGQKPIKGSPYPRSYYRCSSCkGCPARKQVERSYRDPTMLEITYTAEHNHA 295
                       79************************9988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.446231297IPR003657WRKY domain
SuperFamilySSF1182901.57E-25235297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-30235297IPR003657WRKY domain
SMARTSM007741.5E-34236296IPR003657WRKY domain
PfamPF031064.6E-25238294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDLEGDLGAV VRARRQDCSY AKTDGLEFDS CNLLNVGAVV EAPMKELPIS ISISNAVTIY  60
PSPFYDANIS RSQSLSPSIF ERFDNYYHHV TQKAAWSYAT ADSSLLAEGK AEKQDQAHDL  120
IMPTTSNGEE QTSGRFGFEV FCPRQTLSSS PPKGTVHVKT PPRSPIRHDD PPAKTPKREP  180
DCRLSSPIRT DSTAEKIDSN KATIPATKRR KPQTKKTVLI PETEGSWNKP GGGGVASDIW  240
AWRKYGQKPI KGSPYPRSYY RCSSCKGCPA RKQVERSYRD PTMLEITYTA EHNHAWPTSN  300
HRNGTAFTGS STSTQKDMIV PQSPQKSDVP AVQGSNPASP TRDIMIEEEK PGSQPATDCL  360
DFNVIVAAVE DHGQTADLHM LRSNHMHYDD LFADLGELKD FARYSADYKS DEETGSTIVD  420
PYNLFNWSSS SSIKTPADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-182352971374WRKY transcription factor 1
5w3x_B6e-18213298480Disease resistance protein RRS1
5w3x_D6e-18213298480Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-28WRKY DNA-binding protein 35