PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050917-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 189aa    MW: 20809.5 Da    PI: 7.7495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050917-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-162372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p     +   r +lg+++t+e+Aa+a++ a  +l+g
  PSME_00050917-RA 23 QFKGIRVRK-WGKWVSEIRMP-----NsmGRLWLGSYDTPEKAARAYDFAVCCLRG 72
                      69******9.**********9.....3369********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-282281IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-182380IPR016177DNA-binding domain
CDDcd000183.97E-272380No hitNo description
PROSITE profilePS5103220.7982380IPR001471AP2/ERF domain
SMARTSM003803.0E-302386IPR001471AP2/ERF domain
PRINTSPR003674.8E-82435IPR001471AP2/ERF domain
PfamPF008472.5E-92472IPR001471AP2/ERF domain
PRINTSPR003674.8E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAKTSQNQTC RSKPENRSLK SRQFKGIRVR KWGKWVSEIR MPNSMGRLWL GSYDTPEKAA  60
RAYDFAVCCL RGSKAKLNFP SIPPQIPCAS SLSPPQIQAS AAKFAAEEFR LPSEDDASFS  120
PASSGSKPFS FSGSGSEAEC RNDGQEILAE HGPAFWDSVL LECLESGKSL NLDDFPPLDD  180
SMNYYGVLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142080263ATERF1
3gcc_A2e-142080263ATERF1
5wx9_A4e-1423811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038991e-109BT103899.1 Picea glauca clone GQ02803_N18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.15e-37ethylene-responsive transcription factor ERF017
TrEMBLA9NQM12e-81A9NQM1_PICSI; Uncharacterized protein
STRINGERN055812e-36(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-37ERF family protein