PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050946-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HRT-like
Protein Properties Length: 384aa    MW: 43379.6 Da    PI: 10.5706
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050946-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like47.52.9e-15288318131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       iCGv  +dG++C+++P k RKRC+ HKG++i
  PSME_00050946-RA 288 ICGVPQGDGTICRATPLKNRKRCADHKGQKI 318
                       8****************************97 PP
2HRT-like52.39.2e-17349379131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       +CGv+ledGs+Ck  P kgRKRC  HKGmRi
  PSME_00050946-RA 349 TCGVLLEDGSICKIVPDKGRKRCNIHKGMRI 379
                       7*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGAVVVDDER LVVKRLRRED HTYVKHDKVF SNWAVLIGPS DWEDHHLGKE GSEKYRIHNL  60
PSSCSSPGLY ELGIAAPRSL SGRNTRKIKR RYVIVVYLGQ ADNVRTRLQH YGQAGSHLEG  120
NGSFFLHQKL NESSHQQYKS SNDVYVQQGP GLFTEIFSRG FSIVFRWASM DTKAQAEKSE  180
AQLLKVFDYA WNRGGNVARR PHDVLLKLEK LSSQTILESL QRLIFQKRWL PFGKKVGLRI  240
GGKKPASAEE VNERNTIPRI IFGALTCTRN RPHSLSKSGS IDNTRKKICG VPQGDGTICR  300
ATPLKNRKRC ADHKGQKIHK EKKLSKINNV NANIVSSNQG PEEHENEKTC GVLLEDGSIC  360
KIVPDKGRKR CNIHKGMRIT SQAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262192.11e-109PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A1U8A6Q21e-107A0A1U8A6Q2_NELNU; protein EFFECTOR OF TRANSCRIPTION 2
STRINGXP_010262192.11e-108(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.15e-72effector of transcription2