PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050948-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 362aa    MW: 40493.4 Da    PI: 6.3475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050948-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17137187255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd       + +r++lg++ taeeAa a+++a++ ++g
  PSME_00050948-RA 137 RYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTYKTAEEAAMAYDKAALLIRG 187
                       8********.**********....33334**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-30136196No hitNo description
PfamPF008471.5E-12137187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30137195IPR001471AP2/ERF domain
SMARTSM003802.4E-35137201IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22137197IPR016177DNA-binding domain
PROSITE profilePS5103223.446137195IPR001471AP2/ERF domain
PRINTSPR003672.3E-10138149IPR001471AP2/ERF domain
PRINTSPR003672.3E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDLETAFPHG AEGSYRHHHG GVVSSESLLE DVWAHFISTG TANSIQYRSA CVLNHEKEGS  60
CWNPADISLL PLKENDSEDM ILFDLLNQAA KHGWSPSHEQ QVMAIPEATG STPYTPAICN  120
TDQTTRAQRE SAEKSKRYRG VRRRPWGKFA AEIRDSARQG ARVWLGTYKT AEEAAMAYDK  180
AALLIRGTRA TLNFPIEVVT KALADTNDTY SSKLIASRQR RIRMSNGHIE LRKKMEVADA  240
ESFGVDFNKH IAEDDDRLST TMRLKKKLRE RSRHSDHVQE VAGSVLETLV PDQKHLHSAA  300
CGLVNDIRMN SNSNNICLAF DSNVVELQDL GSDFLEELLL STEHSNDFLG FSFPPLLDVL  360
QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-28134198266ATERF1
3gcc_A8e-28134198266ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262268RLKKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-31ethylene responsive element binding factor 2