PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051019-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 247aa    MW: 28347.5 Da    PI: 5.7646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051019-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.1e-26154211259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+W KYG K vk++++pr+YYrC  ++C vkk v+r+a+d+ +v++tY g+Hnhe
  PSME_00051019-RA 154 EDGYKWCKYGNKFVKKNPNPRGYYRCWNKNCDVKKTVQRDAQDKGIVITTYLGKHNHE 211
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28142213IPR003657WRKY domain
SuperFamilySSF1182909.68E-25145213IPR003657WRKY domain
PROSITE profilePS5081128.518148213IPR003657WRKY domain
SMARTSM007746.2E-26153212IPR003657WRKY domain
PfamPF031068.8E-21154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRVEGRGFPE FAMANFDPRN GHFQAFDKDF SYGETQQRQE TSCPRRINEG TEAFGISDFL  60
VLDDDFNNSC KSKDAGDQDD DFSTVKSRPG IPREYPRSFS NNPRCIQGIH LENNSTVTFE  120
LTETIATKPN EKRNVEEGAV KYEFVTRSEI DILEDGYKWC KYGNKFVKKN PNPRGYYRCW  180
NKNCDVKKTV QRDAQDKGIV ITTYLGKHNH ETPTIICYNI GNPEIVQNYC YNIGNPEMVQ  240
ASVAMPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-211462131077Probable WRKY transcription factor 4
2lex_A2e-211462131077Probable WRKY transcription factor 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-27WRKY DNA-binding protein 71