PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00051091-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C3H

Protein Properties

Length: 162aa MW: 18776.5 Da PI: 9.2335

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00051091-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.5e-08	95	116	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++ + G+Ck G +C FaHg PSME_00051091-RA 95 ETCVNYKK-GYCKNGLTCEFAHG 116 6799**.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.0E-5	88	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.822	91	118	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	96	116	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MAMDISISSP VLSPQCAFCS PSSNGQGIAT WIDDNDAKTF LNTCGTQNQS SDELRMYKFK 60 VVICMRDPGH DWTRCPFAHR GERARKRHPS LYCGETCVNY KKGYCKNGLT CEFAHGWFES 120 WLHPHRYRTK HCKHGVNCNR RVFFLRMEMK KSVFHQHSVP PK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110126	1e-130	BT110126.1 Picea glauca clone GQ03216_L21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596057.1	3e-35	zinc finger CCCH domain-containing protein 35-like
Swissprot	Q6L4N4	1e-33	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A2I0X2J8	8e-33	A0A2I0X2J8_9ASPA; Zinc finger CCCH domain-containing protein 2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	4e-35	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]