PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051212-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 472aa    MW: 52540.4 Da    PI: 5.8399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051212-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27188248259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK++ g+++prsYYrCt++   gC+++kkv+r +++p+v+eitY+g H ++
  PSME_00051212-RA 188 EDGYTWRKYGQKDILGAQHPRSYYRCTHKhdlGCQATKKVQRPDDNPSVFEITYSGVHSCQ 248
                       7***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26185248IPR003657WRKY domain
SuperFamilySSF1182902.88E-24186248IPR003657WRKY domain
SMARTSM007745.8E-38187249IPR003657WRKY domain
PfamPF031062.0E-26188248IPR003657WRKY domain
PROSITE profilePS5081120.541188250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MADTRDVKDF DECLKEVNHG CQMAKELETK LNSAKGPDLF ELLWASSAEI VATFSHALEM  60
LRSNSSTPSC LDNWQEELKA ILEKQLGGLE VVHSHKKSVK DHLNSSPRSG GRSSLSGSPP  120
SDMSEGSPAR SLATPSKLKR NDLADTSENE RASNKERRGI SRKRKSLPKW IKIMPANSSE  180
PGNDIPPEDG YTWRKYGQKD ILGAQHPRSY YRCTHKHDLG CQATKKVQRP DDNPSVFEIT  240
YSGVHSCQSD ARLLHFPFPI SQIQGSNIIP NSRTPTTLVF GTDESNLQSN PLFPPTPFLS  300
SSATPWFPAD DGGVCQVKSE SLDSFGKSPS YSPNIDSSTH NAMQPFMTSP TADPIYRLRD  360
SEKEFSADFI PVHHQHNEYP STFPGGELEF PNFAPFFCSP CTSESNYMPP PPPLMQAMDT  420
SRQRSQASES DFTEVVSTHN SATDSPMLEM DHFPTMFTMV NLDSMFERSD NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19188248969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1162530.0BT116253.1 Picea glauca clone GQ03714_K22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S9Q11e-100A0A0C9S9Q1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7171_2278 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-29WRKY family protein