PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051246-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 286aa    MW: 31707.2 Da    PI: 8.1352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051246-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11105155355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h+ +E++RR+++++ f +Lr+llP+       +K   ++ + +A +YI+++q
  PSME_00051246-RA 105 LNHKLVEKQRRKDMKTLFMRLRSLLPEeY---IRGKRAVSDHVVEAANYICYMQ 155
                       58*************************77...99******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-13101172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-10102159No hitNo description
PROSITE profilePS5088811.693102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9106171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-4108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNIPSELHSI VLSCNSVNNI FDAGSVSRGN PFLSTQPLQY ASNLSSEHAH KSNFVDNCNF  60
GSPTNRPDLS VHPSLMPPNI PNSSLPIDGL SSNKLTRAGP TKKSLNHKLV EKQRRKDMKT  120
LFMRLRSLLP EEYIRGKRAV SDHVVEAANY ICYMQQKIED LSREREKLKT NYDKEAKVAF  180
QCPQPPGSVE DLPAVIIKSV GSGVKISINA LKEQISYSDL LVVLEECGLD VVNVASSAFN  240
NRVFLTIYAK QLSDDVHDFN IDALCKKFRD LLTGNHILAD LPSVGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH52e-52B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-21bHLH family protein