PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00051248-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 197aa MW: 22319.7 Da PI: 9.2299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00051248-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.2e-11	13	61	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 hn++Er RR+++N +++L+ l+P+ + +++Kl +++ A +YI +L PSME_00051248-RA 13 WHNANERDRRKKLNALYSQLQLLIPNiN---TKGKLYNPTVVCGALNYIPQL 61 5***********************99...****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.61E-6	8	66	No hit	No description
SuperFamily	SSF47459	1.83E-14	8	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.182	9	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-11	12	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	13	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-5	15	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAEYDAASRK KLWHNANERD RRKKLNALYS QLQLLIPNIN TKGKLYNPTV VCGALNYIPQ 60 LLSQIKELRR QRDELLTTKR ISESSIFNVA GAECHTDLFQ YSAHRNSPVI TLNPGFGRSL 120 AISINTCNVS GLVFSTLLLL LEQEGMEVLN ASKFVAGENL CYTLHLQMTA GRGNFDTAVL 180 RNKIMFLWLS CENRQEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	23	RKKLWHNANERDRRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	4e-20	bHLH family protein