PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051256-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 314aa    MW: 35564.4 Da    PI: 8.1034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051256-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1966119356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRak +
  PSME_00051256-RA  66 KKRRLTSEQVKTLEKSFEGGNKLELERKIQLAKALGLQPRQIAVWFQNRRAKCR 119
                       45689***********************************************98 PP
2HD-ZIP_I/II106.61.9e-3465157193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrl++eqvk+LE+sFe  +kLe erK +la++Lglqprq+avWFqnrRA+ +t qlE+d+++L ++y  lk++ + L +e+++ ++++++
  PSME_00051256-RA  65 EKKRRLTSEQVKTLEKSFEGGNKLELERKIQLAKALGLQPRQIAVWFQNRRAKCRTMQLERDFDMLNQEYGVLKSKYDILLQENRQFKDKVQR 157
                       69****************************************************************999999999999999999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1953123IPR009057Homeodomain-like
SMARTSM003891.8E-1964125IPR001356Homeobox domain
PROSITE profilePS5007116.27765121IPR001356Homeobox domain
PfamPF000461.9E-1666119IPR001356Homeobox domain
CDDcd000863.47E-1666122No hitNo description
Gene3DG3DSA:1.10.10.604.3E-1967128IPR009057Homeodomain-like
PRINTSPR000311.2E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5101117IPR000047Helix-turn-helix motif
PfamPF021832.0E-9122162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTTEGHCTKA MASYTSIGLQ VAGSIKLYGC ENTRKRSMCF SSSMDLSEHD TREEEGPDEF  60
LSFGEKKRRL TSEQVKTLEK SFEGGNKLEL ERKIQLAKAL GLQPRQIAVW FQNRRAKCRT  120
MQLERDFDML NQEYGVLKSK YDILLQENRQ FKDKVQRLNR ELEKIHDNRK ARGFKIESHQ  180
KLANPVFKPT NSPIELSVKK EIAINCSDPL HYVYPMISKE AASSAFNIHR GTLESSPSPV  240
SLISVDTNSS SICLEGYSVR QQVTGGGLET HPAGHLSCCL PNVEVDQSGI HQAEDNRCNL  300
FCSLEGQNRL MLRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG44e-91A9NVG4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-37HD-ZIP family protein