PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051367-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRF
Protein Properties Length: 366aa    MW: 40562 Da    PI: 9.5873
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051367-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.2e-2594138145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  PSME_00051367-RA  94 DPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVET 138
                       79****************************************996 PP
2QLQ64.52.7e-222459237
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      +FT++Q+q+L++Q+l++Ky++a+ PvPp+Ll +i+k
  PSME_00051367-RA 24 PFTPSQWQELEHQALIFKYMMAGIPVPPDLLIPIRK 59
                      9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.4E-132359IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-162458IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.7062459IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.62494138IPR014977WRC domain
PfamPF088792.2E-2195137IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
RLVRMGGEAM NYHSGIQMHG ARPPFTPSQW QELEHQALIF KYMMAGIPVP PDLLIPIRKS  60
LEVINAGLFH HPHHIHPNMP WSTSFQLGFA KNCDPEPGRC RRTDGKKWRC SKDAFPDSKY  120
CERHMHRGRN RSRKPVETPA SHSSSLSLST TSARNNSISS ISNNTQSHIS FATPYSTSRL  180
VGAGVVAPPS ANSNSTTTNQ FNADAGSYSI PSKDYRYMKG DIDEHVFFSS EVSGTSRGLG  240
IDSQSMLSSS LDNGWRSFIP SKVSPFSSQS SFPTDAASKQ QHSFLTSSFG GVQDQPVNVK  300
IEQQPLRHFF DEWPRSRDSS TLSWTDLDEE RSNRNSSTTQ LSISIPITAS DFSGSSNSRS  360
PTRGCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0000720.0KM000072.1 Larix kaempferi growth regulating factor 1 (GRF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854210.11e-101growth-regulating factor 4
TrEMBLA0A0M3LA870.0A0A0M3LA87_9SPER; Growth regulating factor 1
STRINGERN156771e-101(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.16e-48growth-regulating factor 5