PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051403-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 140aa    MW: 16300.8 Da    PI: 10.9873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051403-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+ Ed++l +++k +G g W++ a++ g++R++k+ck+rw++yl
  PSME_00051403-RA 17 RGVWTASEDKILSEYIKNHGDGGWRSLANRAGLKRCGKSCKLRWLNYL 64
                      899********************************************7 PP
2Myb_DNA-binding54.62.5e-1770113146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eEdellv+++++lG+  W++Ia +++ gRt++++k++w++
  PSME_00051403-RA  70 RGNISPEEDELLVRLHRLLGNL-WSLIAGRLP-GRTDNEIKNYWNT 113
                       7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6961264IPR017930Myb domain
SuperFamilySSF466898.44E-2914111IPR009057Homeodomain-like
SMARTSM007175.3E-121666IPR001005SANT/Myb domain
PfamPF002493.1E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231971IPR009057Homeodomain-like
CDDcd001671.07E-82064No hitNo description
PROSITE profilePS5129425.24965119IPR017930Myb domain
SMARTSM007176.6E-1669117IPR001005SANT/Myb domain
PfamPF002492.2E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2572118IPR009057Homeodomain-like
CDDcd001674.25E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRSPSCSKH ENQSLNRGVW TASEDKILSE YIKNHGDGGW RSLANRAGLK RCGKSCKLRW  60
LNYLRPDIKR GNISPEEDEL LVRLHRLLGN LWSLIAGRLP GRTDNEIKNY WNTRLSKRVR  120
MGEFEPKFQK IFPLPLRKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8104401e-108JF810440.1 Picea abies TT2-like protein mRNA, complete cds.
GenBankKU1312181e-108KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756428.16e-63transcription factor MYB7-like
SwissprotQ9S9K92e-54MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2H4Z0B06e-81A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
STRINGXP_004287618.15e-62(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-49myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]