PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051428-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 65aa    MW: 7132.14 Da    PI: 9.2865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051428-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-082660133
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgk 33
                      +g W++eEd++l+ ++   G+   +W+++a+  gk
  PSME_00051428-RA 26 KGLWSQEEDQKLIAYILNNGTLgsSWASVAKQAGK 60
                      678*****************99**********994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.0852165IPR017930Myb domain
SuperFamilySSF466891.79E-52157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-92559IPR009057Homeodomain-like
PfamPF002491.4E-62659IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MSCTLRQGQG ENEDLPQAPS KPKPRKGLWS QEEDQKLIAY ILNNGTLGSS WASVAKQAGK  60
HLLLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-09myb domain protein 83