PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051454-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 328aa    MW: 37275.4 Da    PI: 4.0725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051454-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58e-142675255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p++   r + +lg++ +a++Aa a++aa  +l+g
  PSME_00051454-RA 26 QFKGIRLRK-WGSWVSEIRMPRT---REKLWLGSYPSAQQAACAYDAAVHCLRG 75
                      69*****99.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-252584IPR001471AP2/ERF domain
SMARTSM003805.0E-262689IPR001471AP2/ERF domain
CDDcd000183.45E-222684No hitNo description
PROSITE profilePS5103219.7042683IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-162683IPR016177DNA-binding domain
PfamPF008474.9E-72775IPR001471AP2/ERF domain
PRINTSPR003675.8E-82738IPR001471AP2/ERF domain
PRINTSPR003675.8E-86585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDKPSPQEND HDHAREDGDS GKTRRQFKGI RLRKWGSWVS EIRMPRTREK LWLGSYPSAQ  60
QAACAYDAAV HCLRGRNAKF NFPNCVPDIP SASSLSRRQI QLAAAKYALD RFPSSPPCLQ  120
NVSNEATEEA ASPSRSASIS ETELSSDSLQ ISEEHDLDLM DCLFEISDGN DGFLGLNLER  180
LPSIEEMDFR ECLFELEVSD CNEGCLDLNL NLEVMPAIEE LSALEIVGTT WQEVDSREYL  240
FGSDTCVDRN LEIIPSIEET KVSSLELIRN TWQEQQEVDL REYWFDISEG NLNLERMPPS  300
IVELIDSGWQ EEEGNMNVLI DPTELWNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QTQ85e-54A0A0D6QTQ8_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-26ERF family protein