PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051455-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 271aa    MW: 30750 Da    PI: 4.4757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051455-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-152777155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++kG+r +k +g+Wv+eIr p++   r + +lg++ +a++Aa+a++aa  +l+g
  PSME_00051455-RA 27 PQFKGIRLRK-WGSWVSEIRMPKS---REKLWLGSYPSAQQAARAYDAAVYCLRG 77
                      689*****99.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-242787No hitNo description
PfamPF008474.0E-92777IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-172887IPR016177DNA-binding domain
PROSITE profilePS5103220.5082885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-272886IPR001471AP2/ERF domain
SMARTSM003802.1E-282891IPR001471AP2/ERF domain
PRINTSPR003672.8E-92940IPR001471AP2/ERF domain
PRINTSPR003672.8E-96787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEKPSLQDHD HDHAHAREDK EEGQKYPQFK GIRLRKWGSW VSEIRMPKSR EKLWLGSYPS  60
AQQAARAYDA AVYCLRGPKA KFNFPNSVPN IPSASSLSRR QIQVVAAKYA LDRLPSSPIP  120
LQSISYKATE EAESQSKLAS VSETELSSDS HQISEEQELD LFEVSDGNDG CLGLNLERIS  180
SIEEVSALEV IHSTWQEQPE VDLREYLFEV SNSNGNDGCL GWNLERMPSI EEVSALELIC  240
STWQNQNQDQ DQDQKEGHMN ILIDPTELWN F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ96e-57D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.18e-29ERF family protein