PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051520-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 298aa    MW: 33615.4 Da    PI: 6.7521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051520-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.32.3e-11211234124
                       ---SS-EEEEEEE--TT-SS-EEE CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                       ldDgy+WrKYGqK+vk+s +pr++
  PSME_00051520-RA 211 LDDGYKWRKYGQKVVKNSLHPRKW 234
                       59********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-13196234IPR003657WRKY domain
SuperFamilySSF1182904.97E-10203234IPR003657WRKY domain
PROSITE profilePS5081113.586206248IPR003657WRKY domain
SMARTSM007744.3E-4211251IPR003657WRKY domain
PfamPF031063.9E-7212233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPSREIRHGV MDEANPISSG CIQTASLTTF MEQQPMRVFQ QLQLNAFPSY QLPSNEVLPA  60
TMAHLEPPSR GFISRADHHL NHSHVSSCFN DKDDQFLMDE GSHDLEDAAG GHGYSHDHDV  120
QYTSLQPECG LIQNTNYTHD NFAGCHHPSA SNTGDISPSA RQCFAHTLFF QFSLRWEGSG  180
TWPSEKVKVK VKRKLREPRF CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PRKWIWKLYV  240
ESFTACVVVG SDSIESNNNT TSKGGGENGN WNTMSTVPRH SQHDVTNEMI CAPLFGVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189195KVKRKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1173241e-102BT117324.1 Picea glauca clone GQ03817_C13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-21WRKY family protein