PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 478aa    MW: 51933.4 Da    PI: 5.2163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30271329259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  PSME_00051522-RA 271 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSDHNHP 329
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.281265331IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-30267331IPR003657WRKY domain
SuperFamilySSF1182907.72E-26269331IPR003657WRKY domain
SMARTSM007748.6E-37270330IPR003657WRKY domain
PfamPF031062.4E-25272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRSYWKSMEE SDDGGLEAVV RGGRGYNNNI RMYNNNNNPY GWQPSLIPLG MDSGPIENAS  60
IEEGLVTGSI SMTQMVQVDS SSQMNMFANL LRTSTRPPAT DLQEVCSPFF NGNLLRSGSS  120
SSKLLFENME AVQASSPIFA ADSPTASMFS SVEIKPAYPI KAEPETEFGK LTALKSVEAV  180
SPTRLSSLVP EPDVTISKPL KVEPSTIKEG DGSSLSIQVR TDSAIENGSS SQTTGSAKGQ  240
GSKRRKTQQK RIVCVPAAGG SNRPSGEGLP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK  300
GCSARKQVER SRTDPNMLVI TYTSDHNHPW PTHRNALAGS TRQAEKVNTS EKDNADQRPE  360
NSCVPENTPF SSVMDSSDAT ASEGLQHMGA AGSNSSVQEP DSAIPTGVTN ILTNAHHHDE  420
DFFAELEELP ESLNIFSRHF HDDKSDDEAA SSVLDPFNLF NWSSTTFPDT KTAPLPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-24250332680Disease resistance protein RRS1
5w3x_D8e-24250332680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788702.11e-69probable WRKY transcription factor 14
TrEMBLA0A2H3XTU53e-68A0A2H3XTU5_PHODC; probable WRKY transcription factor 14
STRINGXP_008788702.15e-69(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-58WRKY DNA-binding protein 35