PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051538-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 141aa    MW: 15514.2 Da    PI: 4.1455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051538-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.6e-085411655
               AP2 16 vAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      v+eIr        r r++lg++ t+e+Aa+a++ a  +l+g
  PSME_00051538-RA  5 VSEIRMsN----YRGRIWLGSYETPEKAARAYDFAVYCLKG 41
                      67888822....248******************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.644149IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-12250IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-18250IPR001471AP2/ERF domain
CDDcd000182.87E-18251No hitNo description
SMARTSM003804.2E-15255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGKRVSEIRM SNYRGRIWLG SYETPEKAAR AYDFAVYCLK GSKARLNFPQ TPPEIPFASS  60
LSPQRIQAAA AKYAAEEFPP LSEHAAFSSS GSEGECGYDG QENSAFSDSV FEDVDNGEDP  120
TLQDFPLVDL DVLMEDFGVL L
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.11e-28ethylene-responsive transcription factor ERF017
RefseqXP_018469468.11e-28PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5917e-28ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLB8LPP67e-43B8LPP6_PICSI; Uncharacterized protein
STRINGERN055815e-28(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-26ERF family protein