PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051539-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 182aa    MW: 19595.3 Da    PI: 4.0994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051539-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-132431054
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +k+g+Wv+eIr   + + r r++lg+++t+e+Aa+a++ a  +l+
  PSME_00051539-RA  2 RKWGKWVSEIRMS-N-N-RGRIWLGSYDTPEKAARAYDFAVYCLR 43
                      46**********4.2.2.59******************8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-23158IPR001471AP2/ERF domain
PROSITE profilePS5103217.438152IPR001471AP2/ERF domain
CDDcd000181.05E-22154No hitNo description
Gene3DG3DSA:3.30.730.103.5E-23153IPR001471AP2/ERF domain
PfamPF008473.1E-7241IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-16253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRKWGKWVSE IRMSNNRGRI WLGSYDTPEK AARAYDFAVY CLRVSKARLN FPQTPPEIPF  60
ASSLSPRRIQ AAAAKYAAEE FPPPSEHAAF SSSGSGAECG NDGQENSAFS SSGAEVECGN  120
DGQENSAFSS SGAEVECGND GQENSAFSDS VFEDVDNGEN LTLQDFPLVD LGVLMEDFGA  180
LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPP61e-46B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-30ERF family protein