PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051696-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 263aa    MW: 29241.8 Da    PI: 10.0303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051696-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12168211755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+ +  Lr l+P+      +K++K++i+   ++YI+sLq
  PSME_00051696-RA 168 AVERKRRRKVNELLMSLRALVPNI-----TKMDKSSIVSDGIHYIQSLQ 211
                       79*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.119161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-15166230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-13167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-11168215No hitNo description
Gene3DG3DSA:4.10.280.101.7E-12168225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-10168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRIVPVGGGC RKNKRAKRTV ATEQPVLNTQ NEPTTSARPS TNALPIALDH HQNDLNPATN  60
SSFYFNLSAH STAGCTEASL AFARIQEAAR NGDHTYMLNK NIQNVEPASA LCNIIVKDIG  120
RRSKRNCSSM LITFGQNEEH YADKVTNIVD QRGQESPSNV SWASRNLAVE RKRRRKVNEL  180
LMSLRALVPN ITKMDKSSIV SDGIHYIQSL QKQIKEREVS IPALRYNTTQ QSRSNTSELI  240
SSNTTGSVDE GDYEKKPTKS EAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-15bHLH family protein